Multiple Alignment with all H1 nucleic sequences
This aligment has been done with muscle3.8.1 (linux 64 Bits)MUSCLE (3.8) multiple sequence alignment H1.3|ClusterXIX|54|521 ------------------------------------------------------------ H1.4|ClusterXV|42|557 ------------------------------------------------------------ H1.t|ClusterI|1|510 ------------------------------------------------------------ H1.1|ClusterVII|1|501 ------------------------------------------------------------ H1.2|ClusterII|200|754 TGATGATTCCTTATTTATAAGCTGTTTCAAGGAGCAGCTACTCATGTACTAGCCCCTCTC H1.3|ClusterXIX|54|521 ------------------------------------------------------------ H1.4|ClusterXV|42|557 ------------------------------------------------------------ H1.t|ClusterI|1|510 ------------------------------------------------------------ H1.1|ClusterVII|1|501 ------------------------------------------------------------ H1.2|ClusterII|200|754 CTAAGTTCAACAAAAACCCTTATAATAAGGGCCCTATTTATGGCATTAGAAATGCAACCA H1.3|ClusterXIX|54|521 ------------------------AAAGTAACCAACAAGTTTTTCCGAATTATCCGAAAA H1.4|ClusterXV|42|557 --------------------------------------GTTTTTCCGACTTTACCAAACC H1.t|ClusterI|1|510 ------------------------------------------------------------ H1.1|ClusterVII|1|501 ------------------------------------------------------------ H1.2|ClusterII|200|754 ATAAAGCTCACTCTTCAGAAAAAAAAAAAAAAAAAAAACTTTCGTTCAGCTCTTTTCAAA H1.3|ClusterXIX|54|521 CCGTATATTTTCAAAAA--ATGCCTGC---TGCCAAGTCCGCCGCGAAGCCCGTTACCAA H1.4|ClusterXV|42|557 GACAAAACTTTTTTCAAAAATGCCCGC---TGCCAAGTCCGCTGCCAAGGCCTCGCCCAA H1.t|ClusterI|1|510 -------------------ATGGC------TCCTACCACCGCTACCAAGG------CTAA H1.1|ClusterVII|1|501 -------------------ATGCCAGCAAGCCCGAAGAAAGCAACCAAGGTCGCTGCCAA H1.2|ClusterII|200|754 GCGGAAATCTACAACCAATATGCCAGCCAGCCCAAAGAAAGCAACCAAGGTCGTCGCCAA *** * * * ** * *** * ** H1.3|ClusterXIX|54|521 GAAAGCTGCTCCATCGCACCCACCATACAAGCAAATGATCGCTGACGCTCTCAAGGGTC- H1.4|ClusterXV|42|557 GAAAGCTGCTCCATCGCACCCACCATACAAGCAGATGATCGCTGATACCCTTAAGGGTC- H1.t|ClusterI|1|510 GGCCCCCGCT------CGACCTTCCTTCGCCGTCATGGTCAAGAAGGCCATCGCCAACCT H1.1|ClusterVII|1|501 GAAGTCCGAT------CACCCAACTTACCACGTCATGGTCGCCGCTGCCATCGTCGCACT H1.2|ClusterII|200|754 GAAGGCCGAC------CGTCCAAGCTACAACGTTATGGTCGCCGCCGCCATCGTTGCTCT * * * * ** * * *** ** * * * H1.3|ClusterXIX|54|521 --AATGGCGAAAGGGACTTTCCGTCCTCGCGATCAACAAAATGATCTTTTCTGAGCACAA H1.4|ClusterXV|42|557 --AAGGTCGAAAGGGACTTTCTCTGATCGCCATCTCCAAAATGATCTCCGCTGAGCAGAA H1.t|ClusterI|1|510 CAAGGAGCGAAACGGATCTTCCCGACAGGCCATCGAGAAGTACATTGTCGCCAACTTC-- H1.1|ClusterVII|1|501 CGCGGAACGATCCGGCTCGTCCCGTCAAGCGATCGAGAAGTACATCCTCGCCAACTACAA H1.2|ClusterII|200|754 CAAGGAACGATCCGGTTCTTCCCGACAAGCTATTGAGAAATACATCATTGCAAACTACGA *** ** ** ** ** ** ** * * H1.3|ClusterXIX|54|521 GGACCTCGGCCCACGACACGAAACCAGTCTCAAGCTCGCTCTCAAGCGCGGCATCGAAGA H1.4|ClusterXV|42|557 AAATCTCGGCCCACGACACGAAACCAGCCTCAAGCTCGCTCTCAAGCGCGGCATCGAAGA H1.t|ClusterI|1|510 -GGCGTCGAAAAGACCGGCCA---CCACCTCCGACTTGCTCTTAAGAAGGGTGTCGAGGC H1.1|ClusterVII|1|501 CGGCGTTGAGAAAGGATCCCA---CCATCTCAAGAAGGCCCTCAAGACCGGCGTCGAGAA H1.2|ClusterII|200|754 CGGCGTCGACAAGGGATCCCA---CTTCCTTAAGAAAGCGCTCAAGTCTGGAGTTGAAAA * * * * * ** ** ** *** ** * ** H1.3|ClusterXIX|54|521 TGGTTCATTCGTCAAAGTCAAGGGAGTCGGCCTCAACGGTTCCTTCAAGCTCCCAACTCC H1.4|ClusterXV|42|557 CGGTTCGCTCGTCAAAGTCAAGGGAGTCGGTCTCGCCGGATCCTTCAAGCTTCCCGCTCC H1.t|ClusterI|1|510 TGGTTCGCTCATCCAGGCCAAGGGCGTCGGCGCCAACGGCTCCTTCAAGCTCAAGAAGGT H1.1|ClusterVII|1|501 GGGCAACCTCGTCCAGACTAAGGGCACCGGCGCCTCAGGTTCCTTCAAAATCAAGAAGGC H1.2|ClusterII|200|754 AGGCACCCTCGTCCAGACCAAAGGCATCGGAGCTTCAGGTTCATTCAAGATCAAGAAAGC ** ** ** * ** ** *** ** ** ***** * H1.3|ClusterXIX|54|521 AGTTAAAGCTGCCCCAGCCGCCAAG---AAAGCT-------------------------- H1.4|ClusterXV|42|557 AGTTAAAGCTGCTCCAGCAGTCAAA---AAAGCT------CCTGCCGCCAAGAAGCCCGC H1.t|ClusterI|1|510 CGTCGAGCCAAAGAAACCCGCCAAG---AAGGTTTTGAAG-------------------- H1.1|ClusterVII|1|501 CGAGAAGCC------CGCTGCCAAGCCCAAGGTC------------GCCGCCAAGCCCGC H1.2|ClusterII|200|754 CGAGAAGCC------AGCTGCCAAGCCCAAAGTCGAAAAGCCTGCCGCCAAAAAACCGGC * * * * * *** ** * H1.3|ClusterXIX|54|521 ----------------------------------------CCTGCTGCGAAGAAGGCTTC H1.4|ClusterXV|42|557 ------------------------------CGCCAAAAAGCCAGCTGCGAAGAAGGCTCC H1.t|ClusterI|1|510 ----------------------------------AAGAAGGCTCCCGCCAAGAAAGCTAC H1.1|ClusterVII|1|501 ------------------------------CGCCAAGAAGCCAGCTGCCAAGAAGGTTAC H1.2|ClusterII|200|754 AGCAAAGAAACCAGCAGCAAAAAAGCCAGAAGCAAAGAAGCCAGCGGCCAAAAAAACTAC * * ** ** ** * * H1.3|ClusterXIX|54|521 CG---TCAAAAAGACCGCTGCAAAGAACTCCCCTGTCAAGAAAGCAGC---CAAGAAG-- H1.4|ClusterXV|42|557 CG---TCAAAAAGGCTGCTGCAAAGAAATCCCCCGTCAAGAAAGCCGCCGCCAAGAAG-- H1.t|ClusterI|1|510 CGCCACCAAGAAGAAGGTCACCAAGAAGGTGCC---CAAGGTCTCTGCCGGCAAGAAGGC H1.1|ClusterVII|1|501 TGCCACCAAGAAGGTCGCCGCTAAAAAGCCCGCCGCCAAGA---CGGTTGTCAAGAAG-- H1.2|ClusterII|200|754 TGCGACCAAAAAGCCTGTCGCCAAAAAAGTC---GTCAAGAAAACAGTCGTCAAAAAG-- * *** *** * * ** ** **** * * *** *** H1.3|ClusterXIX|54|521 -CCAGCTGCCAAAAAGAGCGTTC---------------CAGT---------GAAGAAGAC H1.4|ClusterXV|42|557 -CCAGCTGCCAAGAAGACCGTCGTCGTGAAGAAGGCAGCAGC---------AAAGAAGCC H1.t|ClusterI|1|510 CACCGCCACCAAAAAGGCCC------------------CAGC---------CAAGAAAAC H1.1|ClusterVII|1|501 -ACAGCCACCAAGAAGGCTGCCTCTCCCAAAAAGG---TTGT---------GAAGAAGGT H1.2|ClusterII|200|754 -ACTGCCACCAAGAAAGCCGCTTCGCCAACTAAGAAAGCCGTTTCGCCAAAAAAGAAGGT * ** **** ** * ***** H1.3|ClusterXIX|54|521 CGCGACCAAGAAGCCAGCTGCCAAGAAAGCTGCGAAAAAGACCGGCAAGAAGTAATGTAC H1.4|ClusterXV|42|557 AGCGGCGAAGAAGCCAGCAGCGAAGAAAGCAGCGAAAAAGACCGGCAAGAAGTAATGTAC H1.t|ClusterI|1|510 CGCCGCCGCCAAGCCAGCTGCCAAGAAAGCTGCT-------------------------- H1.1|ClusterVII|1|501 CGCTGCCAAGAAGCCCGCTGCCAAAAAGACCGCCAAGAAAACCGGCAAGAAGTA------ H1.2|ClusterII|200|754 CGTCGCCAAAAAGCCAGTCGTCAAAAAGGCCGCAAAGAAAACCGGAAAGAAGTAA----- * * ***** * * ** ** * ** H1.3|ClusterXIX|54|521 TTCTTCCGAATAGCCAAGATCCAAGACAACGTTCATGAAACTCAGGGAAATCCTCTTTTT H1.4|ClusterXV|42|557 TTTTTCCGAAT---CAAGCTCCAAGCCAACGTTCGCG-AACTCAGGAAAATCCTCTTTTT H1.t|ClusterI|1|510 ---------------GCTCCCAAAGCCGCTGCTAA---GGCT------------------ H1.1|ClusterVII|1|501 ---------------AATTCACAAACCAACATCGTCC-AACT------------------ H1.2|ClusterII|200|754 ---------------ACTCGACAAGCTGTCAACAA---AACT------------------ ** ** H1.3|ClusterXIX|54|521 TTAAATACGAATTTTTCTG---TATCTCTTTGTAGTTTGATAAACAAGCCGCAAAGAGAT H1.4|ClusterXV|42|557 AAAATACGACTGTTTTCCGTTCGATCTTTTTGTAGTTTGAAAAACAAGCCGCAAAGAGAT H1.t|ClusterI|1|510 -----AAGACTGTCGTCAA----------------------GGCCAAGCCA--------- H1.1|ClusterVII|1|501 -AAAACAGGCTCTTTTCAG---------------------------AGCCACAAACTCTT H1.2|ClusterII|200|754 ---AAATGGCTCTTTTCAG---------------------------AGCCACAAAATATT * ** **** H1.3|ClusterXIX|54|521 AAAGATTGATAAAGCAAACTGACTCCTATTTCGCAAACCTATTTCTCACCTGCCGAATGT H1.4|ClusterXV|42|557 CAAGATTGAAAAAGCAAACTGACACCC---TCGCACACCTATTTCTCACCTGCCGAATGT H1.t|ClusterI|1|510 ------------------------------------------------------------ H1.1|ClusterVII|1|501 GTAG-----------ATATCTCTCTCGTTATGCCTTTTGTACTTTTTTCCTATTAAATAG H1.2|ClusterII|200|754 ATAA-----------AAAT---CCTCTCTATTACATTTCCACTGCCTCATTAACAGGAAT H1.3|ClusterXIX|54|521 GTACTGTTCAACATCTGCTCATATCATAATTTGCGCGAAACAAAATATCTATTGACAATA H1.4|ClusterXV|42|557 ATCTTGTTCAA-TTCTGTTCATAACATAAATTGCGCAAAACAAAATAAATATTGACAATA H1.t|ClusterI|1|510 -----------------------------------------------------GTCAAGA H1.1|ClusterVII|1|501 GCTATAATAAA------------------------AAAAAAAAAAAAAAAAAAAAAAAAA H1.2|ClusterII|200|754 TTCATAAACAAACATTTTTTCTCTC----------CAAAAAAAAAAA---------AAAA ** * H1.3|ClusterXIX|54|521 AAAATAACAAAAATCAAA H1.4|ClusterXV|42|557 AAAATTATAAAATTCAAA H1.t|ClusterI|1|510 AGGCCAAGTAA------- H1.1|ClusterVII|1|501 AAAAAAAAAAAAAAAAAA H1.2|ClusterII|200|754 AAAAAAAAAAAAAAAAAA * * **