Multiple Alignment with all H2A nucleic sequences
This aligment has been done with muscle3.8.1 (linux 64 Bits)MUSCLE (3.8) multiple sequence alignment H2A.Z|ClusterXVI|72|518 GTGCCCTCGAATCACTCGGCCACATTTTCGGCGAGCACAACTTTGGCGCGCAACTGAGAG H2A.3|ClusterIV|1|474 ----------------------ATGGCACGTCAGATCAAGAAAATTGATACATCAGCTAA H2A.4|ClusterIII|1|375 ------------------------------------------------------------ H2A.sq3|ClusterXIII|1|372 ------------------------------------------------------------ H2A.sq1|ClusterIX|1|372 ------------------------------------------------------------ H2A.sq2|ClusterX|1|372 ------------------------------------------------------------ H2A.1|ClusterVII|21|392 ---------------------------------------------------GAAAAAAAT H2A.2|ClusterXII|21|392 ---------------------------------------------------AAAAAAGTT H2A.1|ClusterIII|4|375 ------------------------------------------------------------ H2A.1|ClusterII|1|373 ------------------------------------------------------------ H2A.1|ClusterVIII|1|375 ------------------------------------------------------------ H2A.1|ClusterXX|1|372 ------------------------------------------------------------ H2A.t2|ClusterVI|1|375 ------------------------------------------------------------ H2A.t1|ClusterXI|1|375 ------------------------------------------------------------ H2A.t3|ClusterI|1|375 ------------------------------------------------------------ H2A.Z|ClusterXVI|72|518 AAATCAAACACATG--------------------------TCTGGTAAAG-GAAAAGGTA H2A.3|ClusterIV|1|474 TTCTACCAGAAATGGAGGCGACCCATCCTTCGTCAAGGGCTCTGAAGAAGCGA------A H2A.4|ClusterIII|1|375 -----------ATG--------------------------GCCAAGATGC-GAGCGATGC H2A.sq3|ClusterXIII|1|372 -----------ATG--------------------------TCTGGACGAA-AATCGCTGA H2A.sq1|ClusterIX|1|372 -----------ATG--------------------------TCCGGACGAA-AATCGATGA H2A.sq2|ClusterX|1|372 -----------ATG--------------------------TCTGGACGAA-AATCGATGA H2A.1|ClusterVII|21|392 AACTTTTGATAATG--------------------------TCCGGAAAAG-GT------A H2A.2|ClusterXII|21|392 AATTTTTGGAAATG--------------------------TCCGGAAAAG-GT------A H2A.1|ClusterIII|4|375 --------AAAATG--------------------------TCCGGAAAAG-GC------A H2A.1|ClusterII|1|373 -----------ATG--------------------------TCCGGAAAAG-GA------A H2A.1|ClusterVIII|1|375 -----------ATG--------------------------TCCGGTAAAG-GA------A H2A.1|ClusterXX|1|372 -----------ATG--------------------------TCCGGTAAAG-GA------A H2A.t2|ClusterVI|1|375 -----------ATG--------------------------TCCGGAAAAG-GA------A H2A.t1|ClusterXI|1|375 -----------ATG--------------------------TCAGGAAAAG-GA------A H2A.t3|ClusterI|1|375 -----------ATG--------------------------TCAGGAAAAG-GA------A *** * H2A.Z|ClusterXVI|72|518 AAGGAAAGGGTGCCGGAAGTGCTGGTGGAAAAGGCGAGGGCAAATCAAAAAAGAACAAAT H2A.3|ClusterIV|1|474 AGAGAAGATGGCCAAGATGCGAGCGATGCAAA----AAGGCGGAAAACGAG--------- H2A.4|ClusterIII|1|375 AAA---------------------------------AAGGCGGAAAACGAG--------- H2A.sq3|ClusterXIII|1|372 CAAAG----------------------AAATCCACCAAGGCAGGTAAGAAA--------- H2A.sq1|ClusterIX|1|372 ACAAG----------------------AAAGCCACCAAGGCCGGCAAGAAG--------- H2A.sq2|ClusterX|1|372 ACAAG----------------------AAGGCCGCCAAGGCAGGCAAGAAG--------- H2A.1|ClusterVII|21|392 AAGGA----------------------GCCAAAGCCAAGGCAAAGGCAAAG--------- H2A.2|ClusterXII|21|392 AAGGA----------------------GCCAAGGCGAAAGCAAAGTCGAAG--------- H2A.1|ClusterIII|4|375 AAGGA----------------------GCAAAAGCCAAAGCAAAGGCAAAG--------- H2A.1|ClusterII|1|373 AAGGA----------------------GCAAAGGCGAAGGCGAAGGCAAAG--------- H2A.1|ClusterVIII|1|375 AAGGA----------------------GCAAAAGCAAAGGCGAAGGCAAAG--------- H2A.1|ClusterXX|1|372 AAGGA----------------------GCAAAAGCAAAGGCGAAGGCAAAA--------- H2A.t2|ClusterVI|1|375 AGAAGAA-------------------GACCGCTACGAAGACGAAG---CAG--------- H2A.t1|ClusterXI|1|375 AGAAGAA-------------------CGCAAAAGCCACCACCAAG---AAG--------- H2A.t3|ClusterI|1|375 AGAAGAA-------------------CGCTAAAGCCACCACCAAG---AAG--------- * * * H2A.Z|ClusterXVI|72|518 CAATTTCGAGATCTGCTC------GAGCTGGTCTCCAGTTCCCAGTTGGTCGAATTCACA H2A.3|ClusterIV|1|474 -----GGCCAA-CTCTTCAAAAGAAAACAGGTCTGGTCTTCCCCGTGTTCCTCTTCAAGA H2A.4|ClusterIII|1|375 -----GGCC-ATCTATCCAAACGAAAACAAAGCTAATCTTCCCGGTGATGCTCGTCAAGA H2A.sq3|ClusterXIII|1|372 -----AGCCGATCTTCGC------GAGCTGGACTCCAGTTCCCTGTTGGACGAGTTCATC H2A.sq1|ClusterIX|1|372 -----AGCCGATCTTCCC------GAGCTGGACTCCAGTTCCCCGTCGGACGAGTCCACC H2A.sq2|ClusterX|1|372 -----AGCCGATCTTCCC------GAGCTGGACTTCAGTTCCCCGTCGGCCGAATCCACC H2A.1|ClusterVII|21|392 -----TCCCGATCTGTCC------GAGCCGGACTTCAGTTCCCAGTCGGTCGAGTCCACC H2A.2|ClusterXII|21|392 -----TCCCGATCTGTCC------GAGCCGGACTTCAGTTCCCCGTTGGCCGAGTCCACC H2A.1|ClusterIII|4|375 -----TCACGATCCGTCC------GAGCTGGACTCCAGTTTCCCGTCGGCCGTGTCCACC H2A.1|ClusterII|1|373 -----TCTCGATCTGTGC------GAGCTGGACTCCAGTTCCCCGTCGGCCGAGTCCACC H2A.1|ClusterVIII|1|375 -----TCCCGATCTGTGC------GAGCCGGACTTCAGTTCCCCGTCGGCCGAGTTCATC H2A.1|ClusterXX|1|372 -----TCCCGATCTGTGC------GAGCCGGACTTCAGTTCCCCGTCGGCCGAGTCCATC H2A.t2|ClusterVI|1|375 -----ACTCGATCTTCCC------GAGCTGGTCTCCAGTTCCCCGTCGGCCGAGTCCATC H2A.t1|ClusterXI|1|375 -----TCCCGATCCAGCC------GGGCCGGACTTCAGTTCCCCGTTGGACGAGTCCATC H2A.t3|ClusterI|1|375 -----TCCCGATCAAGCC------GGGCCGGACTCCAGTTCCCCGTTGGACGAGTCCACC * * * * ** ** ** ** * * * H2A.Z|ClusterXVI|72|518 GGCACCTCAAATCAAAAGTTCCAGCCCAC-GGGCGTGTTGGCG----CTACCTCTTCCGT H2A.3|ClusterIV|1|474 AGAATAT----GAAGAAGATGAACCAGAAT-CTCAAACTGAAGACGGTTGGGACTCCGAT H2A.4|ClusterIII|1|375 GGAATTT----AAAGAAGATGAACCAGAACC-TCAAACTGAAGACAATCGGGACTTCAAT H2A.sq3|ClusterXIII|1|372 GCATGCT----GCGCAACGGCAACTGGGCAGACCGAGTCGGAG----CCGGTGCTCCGGT H2A.sq1|ClusterIX|1|372 GAATGCT----CCGCAATGGTAAATGGGCCGACCGCGTTGGTG----CCGGCGCTCCCGT H2A.sq2|ClusterX|1|372 GAATGCT----CCGCAATGGTAACTGGGCCGACCGCGTTGGTG----CCGGCGCTCCCGT H2A.1|ClusterVII|21|392 GAATGCT----CCGAAAGGGCAACTACGCCGAGCGAGTCGGAG----CTGGCGCACCAGT H2A.2|ClusterXII|21|392 GAATGCT----CCGAAAGGGCAACTACGCCGAGCGAGTCGGCG----CTGGCGCTCCAGT H2A.1|ClusterIII|4|375 GAATGCT----GCGAAAAGGCAACTACGCAGAGCGAGTTGGAG----CCGGCGCTCCCGT H2A.1|ClusterII|1|373 GAATGCT----TCGCAAGGGCAACTACGCTGAGCGAGTCGGAG----CCGGTGCCCCCGT H2A.1|ClusterVIII|1|375 GAATGCT----TCGCAAAGGCAACTACGCTGAGCGGGTCGGAG----CCGGTGCCCCCGT H2A.1|ClusterXX|1|372 GAATGCT----TCGCAAAGGCAACTACGCTGAGCGAGTCGGAG----CCGGTGCCCCCGT H2A.t2|ClusterVI|1|375 GAATGCT----TCGACGAGGCAACTGGGCTGACCGAGTCGGTG----CAGGTGCTCCTGT H2A.t1|ClusterXI|1|375 GAATGCT----TCGACGAGGCAACTGGGCCGACCGAGTTGGCG----CTGGTGCCCCCGT H2A.t3|ClusterI|1|375 GAATGCT----TCGACGAGGCAACTGGGCCGACCGAGTTGGTG----CTGGTGCCCCCGT * * * * * * * * H2A.Z|ClusterXVI|72|518 CTATTCTGCCGCAATCCTCGAATACCTCACTGCAGAAGTATTAGAACTCGCTGGAAATGC H2A.3|ClusterIV|1|474 CTACATGACCGCCGTTGTTGAGTATCTCTGCGCGGAAGTGCTTGAACTTGCCGGAAATGC H2A.4|ClusterIII|1|375 CTACATGGCCGCTGTCATGGAGTACCTCTGCGCGGAAGTGCTTGAACTTGCCGGAGACGC H2A.sq3|ClusterXIII|1|372 CTACCTCGCCGCAGTGCTTGAGTACCTGACCGCTGAGGTGTGCGAGCTCGCCGGAAACGC H2A.sq1|ClusterIX|1|372 CTACTTAGCCGCCGTCCTCGAGTATCTCACCGCCGAGGTCTGCGAGCTCGCTGGTAACGC H2A.sq2|ClusterX|1|372 CTACTTGGCCGCCGTCCTTGAGTATCTCACCGCTGAGGTCTGCGAGCTCGCTGGCAACGC H2A.1|ClusterVII|21|392 CTACCTCGCCGCCGTCCTTGAATACTTGTCCGCTGAAGTTCTCGAGTTGGCCGGAAACGC H2A.2|ClusterXII|21|392 CTACCTCGCTGCTGTCCTCGAATATCTCTCCGCTGAAGTTCTCGAGTTGGCCGGAAACGC H2A.1|ClusterIII|4|375 CTACCTTGCTGCCGTCCTTGAATATTTGTCCGCTGAAGTTCTGGAATTGGCCGGAAACGC H2A.1|ClusterII|1|373 CTACCTCGCTGCCGTACTCGAATATCTCTCCGCTGAAGTCCTCGAGTTGGCTGGAAACGC H2A.1|ClusterVIII|1|375 CTACCTCGCTGCCGTCCTCGAATATCTTTCCGCTGAAGTCCTCGAATTGGCTGGAAACGC H2A.1|ClusterXX|1|372 CTACCTCGCTGCCGTCCTCGAATATCTCTCCGCTGAAGTCCTCGAATTGGCTGGAAACGC H2A.t2|ClusterVI|1|375 TTACATGGCCGCCGTCCTCGAGTATTTGACTGCTGAGGTCGTCGAACTCGCTGGCAACGC H2A.t1|ClusterXI|1|375 TTACATGGCCGCTGTCCTTGAGTACCTGACTGCTGAAGTCGTCGAGCTCGCTGGCAACGC H2A.t3|ClusterI|1|375 TTACTTGGCCGCTGTCCTTGAGTACCTGACTGCTGAAGTCGTCGAGCTGGCTGGCAACGC ** * ** * * ** ** * ** ** ** ** * ** ** * ** H2A.Z|ClusterXVI|72|518 TTCAAAGGATCTAAAGGTCAAACGAATTACGCCCAGACATTTACAGCTTGCAATTAGAGG H2A.3|ClusterIV|1|474 GGCGACAGACAACAAGAAGCGCCGAATCATCCCTCGTCACATCCAACTTGCCATCGGAAA H2A.4|ClusterIII|1|375 AGCGAAAGACAACAAGAAGAAACGCATCATCCCTCGATATATCCAACTTGCCATTAGAAA H2A.sq3|ClusterXIII|1|372 TGCCCGCGACAACAAGAAGACACGTATCACACCTCGTCATATCCAGCTCGCCATTGGCAA H2A.sq1|ClusterIX|1|372 GGCCCGGGACAACAAAAAGACTCGCATCAACCCCCGACACATTATGCTCGCTATCGGAAA H2A.sq2|ClusterX|1|372 CGCACGGGACAACAAGAAGACCCGCATCAACCCCCGACACATTCAGCTTGCTATCGGAAA H2A.1|ClusterVII|21|392 CGCCCGAGACAATAAGAAGACTCGAATCATCCCTCGACATCTCCAGCTCGCCATCCGAAA H2A.2|ClusterXII|21|392 TGCCAGAGACAACAAGAAGACTCGAATCATCCCTCGACATCTTCAGCTCGCCATCCGAAA H2A.1|ClusterIII|4|375 TGCCCGAGACAACAAGAAGACCCGAATCATCCCTCGACATCTCCAGCTCGCCATCAGAAA H2A.1|ClusterII|1|373 CGCCCGAGATAACAAAAAGACCCGAATCATCCCACGACATCTCCAGCTCGCCATCAGGAA H2A.1|ClusterVIII|1|375 AGCACGAGACAACAAGAAGACCCGAATCATCCCACGACATCTTCAACTCGCCATCAGAAA H2A.1|ClusterXX|1|372 CGCCCGAGACAACAAGAAGACACGAATCATCCCACGACATCTCCAACTCGCCATCAGAAA H2A.t2|ClusterVI|1|375 CGCCCGAGACAACAAGAAGTCGCGAATCATTCCCCGACATCTTCAGCTAGCCATCCGAAA H2A.t1|ClusterXI|1|375 CGCCCGAGACAACAAAAAGTCGCGAATCAACCCACGACACCTCCAGCTCGCCATCCGAAA H2A.t3|ClusterI|1|375 CGCCCGAGACAACAAAAAGTCGCGAATCAACCCACGACATCTCCAGCTCGCCATCCGAAA * ** ** ** ** * ** * * * ** ** ** * H2A.Z|ClusterXVI|72|518 AGATGAAGAGTTAGATATGCTGATC---AAAGCCACGATTGCCGGTGGTGGAGTTATTCC H2A.3|ClusterIV|1|474 CGACGACGAGATGAGCAAGCTGCTCGGCGATGTCACCATTGCTCAGGGTGGAGTTCTGCC H2A.4|ClusterIII|1|375 TGACGAAGAGTTAACAAAGGTGCTCGGCGATGTCACCATTGCTCAGGGAGGTGTCCTTCC H2A.sq3|ClusterXIII|1|372 TGACGAGGAACTGCAGAAAATTCTTGCTGGAGTCACTGTCTCCCAAGGCGGCGTCATTCC H2A.sq1|ClusterIX|1|372 CGACGAGGAGCTTCAGAAGGTCCTTGCCGGAGTCACCATCTCTCAGGGCGGTGTTCTACC H2A.sq2|ClusterX|1|372 CGATGAGGAGCTCTCGAAGATCCTTGCTGGAGTCACCGTCTCTCAGGGCGGTGTCCTCCC H2A.1|ClusterVII|21|392 CGACGAAGAGTTGAACAAGCTCCTCGGTGGCGTCACCATTGCCCAGGGTGGTGTCCTCCC H2A.2|ClusterXII|21|392 CGACGAAGAGTTGAACAAGCTCCTCGGTGGTGTCACCATCGCCCAGGGTGGTGTCCTCCC H2A.1|ClusterIII|4|375 CGACGAAGAGTTAAACAAACTCCTCGGTGGTGTCACCATCGCTCAGGGTGGTGTTCTCCC H2A.1|ClusterII|1|373 CGACGAAGAGTTGAACAAGCTCCTCGGCGGCGTCACCATCGCCCAGGGTGGTGTTCTACC H2A.1|ClusterVIII|1|375 CGACGAAGAGTTGAACAAACTCCTCGGCGGCGTCACCATCGCCCAGGGTGGTGTCCTACC H2A.1|ClusterXX|1|372 CGACGAAGAGTTGAACAAACTCCTCGGCGGCGTCACAATCGCCCAAGGTGGTGTCCTACC H2A.t2|ClusterVI|1|375 CGATGAAGAGCTCAGCAAGCTCCTCGGCGGCGTCACCATTGCTCAGGGTGGTGTCCTCCC H2A.t1|ClusterXI|1|375 CGATGAAGAGCTCACCAAGCTTGTTGGAAAGGTCACCATCGCCCAGGGTGGCGTCCTTCC H2A.t3|ClusterI|1|375 CGATGAAGAGCTTACCAAGCTTGTTGGAAAGGTCACCATCGCCCAGGGTGGCGTCCTCCC ** ** ** * * * * * *** * * ** ** ** * ** H2A.Z|ClusterXVI|72|518 GCACATCCA---CAAGTCGCTGCTGGAGAAATCGCGGCCGACTACCGATG--GCGTAATG H2A.3|ClusterIV|1|474 CTGCATTCACTCCGTTCTCCTCCCAAAGAA---------GACTCTCGACA---AGTAA-- H2A.4|ClusterIII|1|375 GAACATCCAAGCCGTCCTTCTTCCAAAGAA---------GACTGCTGAGA---AGTAA-- H2A.sq3|ClusterXIII|1|372 TTGCATCAACGCTGCGCTATTGCCAAACAA---------GA------AGA---ACTAA-- H2A.sq1|ClusterIX|1|372 CAGCATCCACGCTGTTCTCCTTCCCAAGAA---------GA------AGA---ACTAA-- H2A.sq2|ClusterX|1|372 CAGCATCCACGCTGCTCTTCTTCCCAAGAA---------GA------AGA---ATTAA-- H2A.1|ClusterVII|21|392 TAACATCCAGGCCATCCTTCTCCCCAAGAA---------AACTGGCGACA---AGTAATT H2A.2|ClusterXII|21|392 CAACATCCAGGCCATCCTCCTCCCAAAGAA---------AACTGGCGACA---AGTAAAT H2A.1|ClusterIII|4|375 CAACATCCAAGCCATCCTTCTTCCCAAGAA---------GACAGGCGACA---AGTAAAT H2A.1|ClusterII|1|373 CAACATCCAAGCAATCCTTCTTCCCAAGAA---------GACTGGAGACA---AGTAA-- H2A.1|ClusterVIII|1|375 AAACATCCAGGCCATCCTTCTTCCCAAGAA---------GACTGGAGACA---AGTGA-- H2A.1|ClusterXX|1|372 AAACATCCAGGCCATCCTTCTTCCCAAGAA---------GACTGGAGACA---AGTAA-- H2A.t2|ClusterVI|1|375 CAACATCCAGGCTATTCTTCTACCAAAGAA---------GACCGCCAAGAAGGAGTAA-- H2A.t1|ClusterXI|1|375 CAACATTAACCCTGCTCTTCTCCCCAAGAA---------GGCCCCAAAGAAAGAGTAA-- H2A.t3|ClusterI|1|375 CAACATCAACCCCGCTCTTCTCCCCAAGAA---------AGCCCCAAAGAAGGAGTAA-- *** * * * * ** * * * H2A.Z|ClusterXVI|72|518 GCACCTCCACAACCACCACAATAGCTCCATTTCAATCTCTCCTTTTTTTGCTTTTTTTCT H2A.3|ClusterIV|1|474 ------------------------------------------------------------ H2A.4|ClusterIII|1|375 ------------------------------------------------------------ H2A.sq3|ClusterXIII|1|372 ------------------------------------------------------------ H2A.sq1|ClusterIX|1|372 ------------------------------------------------------------ H2A.sq2|ClusterX|1|372 ------------------------------------------------------------ H2A.1|ClusterVII|21|392 TTCTTTCTAA--GAATTTACAAAAA-CCGGCCC-----------------TTTTTAGGGC H2A.2|ClusterXII|21|392 TTCTTGCGAAAGAAACATTCAAAAACCCGGCCC-----------------TTTTTAGGGC H2A.1|ClusterIII|4|375 TTCTTTTTAAGAAATTGTCAAAA---CCGGCCC-----------------TTTTTAGGGC H2A.1|ClusterII|1|373 ------------------------------------------------------------ H2A.1|ClusterVIII|1|375 ------------------------------------------------------------ H2A.1|ClusterXX|1|372 ------------------------------------------------------------ H2A.t2|ClusterVI|1|375 ------------------------------------------------------------ H2A.t1|ClusterXI|1|375 ------------------------------------------------------------ H2A.t3|ClusterI|1|375 ------------------------------------------------------------ H2A.Z|ClusterXVI|72|518 CACTGCCTGTGCAGTTTCTCGCTGTTTTAACTCTCGAAAAAATAATGGACAAAAATAAAA H2A.3|ClusterIV|1|474 ------------------------------------------------------------ H2A.4|ClusterIII|1|375 ------------------------------------------------------------ H2A.sq3|ClusterXIII|1|372 ------------------------------------------------------------ H2A.sq1|ClusterIX|1|372 ------------------------------------------------------------ H2A.sq2|ClusterX|1|372 ------------------------------------------------------------ H2A.1|ClusterVII|21|392 CACAAATTCAAACATGTTTTTACTG------CCACATCTTGATATTCTAATTGAATAAAA H2A.2|ClusterXII|21|392 CACAAATTC-----TCGTTCTACTGTAAATACAATCACTCAACA----AATAAAATAAAA H2A.1|ClusterIII|4|375 CACAAACT----------------------------------------------ATCAAA H2A.1|ClusterII|1|373 ------------------------------------------------------------ H2A.1|ClusterVIII|1|375 ------------------------------------------------------------ H2A.1|ClusterXX|1|372 ------------------------------------------------------------ H2A.t2|ClusterVI|1|375 ------------------------------------------------------------ H2A.t1|ClusterXI|1|375 ------------------------------------------------------------ H2A.t3|ClusterI|1|375 ------------------------------------------------------------ H2A.Z|ClusterXVI|72|518 ATCAGCATCCGAAAAAAAAAAAAAAAAAAAAAAAAAACCCNTG- H2A.3|ClusterIV|1|474 -------------------------------------------- H2A.4|ClusterIII|1|375 -------------------------------------------- H2A.sq3|ClusterXIII|1|372 -------------------------------------------- H2A.sq1|ClusterIX|1|372 -------------------------------------------- H2A.sq2|ClusterX|1|372 -------------------------------------------- H2A.1|ClusterVII|21|392 GTTTTTAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---- H2A.2|ClusterXII|21|392 ATATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA H2A.1|ClusterIII|4|375 ATTAATTCTTGTAAATTTATAACAATAAAATATATTTTATTTTT H2A.1|ClusterII|1|373 -------------------------------------------- H2A.1|ClusterVIII|1|375 -------------------------------------------- H2A.1|ClusterXX|1|372 -------------------------------------------- H2A.t2|ClusterVI|1|375 -------------------------------------------- H2A.t1|ClusterXI|1|375 -------------------------------------------- H2A.t3|ClusterI|1|375 --------------------------------------------