Multiple Alignment with all H2A protein sequences
This aligment has been done with muscle3.8.1 (linux 64 Bits)MUSCLE (3.8) multiple sequence alignment H2A.3|ClusterIV|protein MARQIKKIDTSANSTRNGGDPSFVKGSEEAKEKMAKMRAMQKGGKRGPTLQKKTGLVFPV H2A.4|ClusterIII|protein -------------MAKMR------AMQK--------------GGKRGPSIQTKTKLIFPV H2A.Z|ClusterXVI|protein -------------MSGKG------KGKGKGAGSAGGKGEGKSKKNKSISRSARAGLQFPV H2A.sq3|ClusterXIII|protein -------------MSGRK------SLTK------------KSTKAGKKSRSSRAGLQFPV H2A.sq1|ClusterIX|protein -------------MSGRK------SMNK------------KATKAGKKSRSSRAGLQFPV H2A.sq2|ClusterX|protein -------------MSGRK------SMNK------------KAAKAGKKSRSSRAGLQFPV H2A.1|ClusterII|protein -------------MSGKG------KGAK--------------AKAKAKSRSVRAGLQFPV H2A.1|ClusterIII|protein -------------MSGKG------KGAK--------------AKAKAKSRSVRAGLQFPV H2A.1|ClusterVII|protein -------------MSGKG------KGAK--------------AKAKAKSRSVRAGLQFPV H2A.1|ClusterVIII|protein -------------MSGKG------KGAK--------------AKAKAKSRSVRAGLQFPV H2A.1|ClusterXX|protein -------------MSGKG------KGAK--------------AKAKAKSRSVRAGLQFPV H2A.2|ClusterXII|protein -------------MSGKG------KGAK--------------AKAKSKSRSVRAGLQFPV H2A.t2|ClusterVI|protein -------------MSGKG------KKKT--------------ATKTKQTRSSRAGLQFPV H2A.t1|ClusterXI|protein -------------MSGKG------KKNA--------------KATTKKSRSSRAGLQFPV H2A.t3|ClusterI|protein -------------MSGKG------KKNA--------------KATTKKSRSSRAGLQFPV : : . .: * *** H2A.3|ClusterIV|protein FLFKKNMKKMNQNLKLKTVGTPIYMTAVVEYLCAEVLELAGNAATDNKKRRIIPRHIQLA H2A.4|ClusterIII|protein MLVKRNLKKMNQNLKLKTIGTSIYMAAVMEYLCAEVLELAGDAAKDNKKKRIIPRYIQLA H2A.Z|ClusterXVI|protein GRIHRHLKSKVPAHGRVGATSSVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA H2A.sq3|ClusterXIII|protein GRVHRMLRNGNWA-DRVGAGAPVYLAAVLEYLTAEVCELAGNAARDNKKTRITPRHIQLA H2A.sq1|ClusterIX|protein GRVHRMLRNGKWA-DRVGAGAPVYLAAVLEYLTAEVCELAGNAARDNKKTRINPRHIMLA H2A.sq2|ClusterX|protein GRIHRMLRNGNWA-DRVGAGAPVYLAAVLEYLTAEVCELAGNAARDNKKTRINPRHIQLA H2A.1|ClusterII|protein GRVHRMLRKGNYA-ERVGAGAPVYLAAVLEYLSAEVLELAGNAARDNKKTRIIPRHLQLA H2A.1|ClusterIII|protein GRVHRMLRKGNYA-ERVGAGAPVYLAAVLEYLSAEVLELAGNAARDNKKTRIIPRHLQLA H2A.1|ClusterVII|protein GRVHRMLRKGNYA-ERVGAGAPVYLAAVLEYLSAEVLELAGNAARDNKKTRIIPRHLQLA H2A.1|ClusterVIII|protein GRVHRMLRKGNYA-ERVGAGAPVYLAAVLEYLSAEVLELAGNAARDNKKTRIIPRHLQLA H2A.1|ClusterXX|protein GRVHRMLRKGNYA-ERVGAGAPVYLAAVLEYLSAEVLELAGNAARDNKKTRIIPRHLQLA H2A.2|ClusterXII|protein GRVHRMLRKGNYA-ERVGAGAPVYLAAVLEYLSAEVLELAGNAARDNKKTRIIPRHLQLA H2A.t2|ClusterVI|protein GRVHRMLRRGNWA-DRVGAGAPVYMAAVLEYLTAEVVELAGNAARDNKKSRIIPRHLQLA H2A.t1|ClusterXI|protein GRVHRMLRRGNWA-DRVGAGAPVYMAAVLEYLTAEVVELAGNAARDNKKSRINPRHLQLA H2A.t3|ClusterI|protein GRVHRMLRRGNWA-DRVGAGAPVYLAAVLEYLTAEVVELAGNAARDNKKSRINPRHLQLA .:. :. :.:* :*::*** *** ****:*: * * ** **:: ** H2A.3|ClusterIV|protein IGNDDEMSKLLGDVTIAQGGVLPCIHSVLLPKKTLDK----------- H2A.4|ClusterIII|protein IRNDEELTKVLGDVTIAQGGVLPNIQAVLLPKKTAEK----------- H2A.Z|ClusterXVI|protein IRGDEELDMLI-KATIAGGGVIPHIHKSLLEKSRPTTDGVMAPPQPPQ H2A.sq3|ClusterXIII|protein IGNDEELQKILAGVTVSQGGVIPCINAALLPNKKN------------- H2A.sq1|ClusterIX|protein IGNDEELQKVLAGVTISQGGVLPSIHAVLLPKKKN------------- H2A.sq2|ClusterX|protein IGNDEELSKILAGVTVSQGGVLPSIHAALLPKKKN------------- H2A.1|ClusterII|protein IRNDEELNKLLGGVTIAQGGVLPNIQAILLPKKTGDK----------- H2A.1|ClusterIII|protein IRNDEELNKLLGGVTIAQGGVLPNIQAILLPKKTGDK----------- H2A.1|ClusterVII|protein IRNDEELNKLLGGVTIAQGGVLPNIQAILLPKKTGDK----------- H2A.1|ClusterVIII|protein IRNDEELNKLLGGVTIAQGGVLPNIQAILLPKKTGDK----------- H2A.1|ClusterXX|protein IRNDEELNKLLGGVTIAQGGVLPNIQAILLPKKTGDK----------- H2A.2|ClusterXII|protein IRNDEELNKLLGGVTIAQGGVLPNIQAILLPKKTGDK----------- H2A.t2|ClusterVI|protein IRNDEELSKLLGGVTIAQGGVLPNIQAILLPKKTAKKE---------- H2A.t1|ClusterXI|protein IRNDEELTKLVGKVTIAQGGVLPNINPALLPKKAPKKE---------- H2A.t3|ClusterI|protein IRNDEELTKLVGKVTIAQGGVLPNINPALLPKKAPKKE---------- * .*:*: :: .*:: ***:* *: ** :.