Multiple Alignment with all H2B nucleic sequences
This aligment has been done with muscle3.8.1 (linux 64 Bits)MUSCLE (3.8) multiple sequence alignment H2B.4|ClusterVI|1|354 ATGGCAAATTTAGTCGCTCGCAAAGCTAAGAAATCAA------------AGCCTGCA--C H2B.3|ClusterIII|1|363 ATGCC----------ACGAGGTCGACCAAGAAAGAATCCTGAGGATCCGTCCGCGCCCAA H2B.1|ClusterII|1|363 ATGGC------CGCTACAAAAGGTTCGAAAAAAGCAATCGTCAAAAAGGCTCCACCAGCC H2B.2|ClusterVIII|1|363 ATGGC------CGCTACCAAAGGATCAAAGAAAGCAATCGTCAAAAAGGCTCCACCAGCT H2B.2|ClusterXX|1|363 ATGGC------CGCTACCAAAGGATCAAAGAAAGCAATCGTCAAAAAGGCTCCACCAGCT H2B.1|ClusterVII|1|363 ATGGC------CGCCACCAAAGGATCGAAGAAAGCTATCGTAAAGAAGGCTCCCCCAGCC H2B.2|ClusterXII|1|363 ATGGC------AGCTACCAAAGGATCAAAGAAAGCAATTGTCAAGAAGGCCCCTCCAGCT H2B.t2|ClusterI|1|345 ATGCCCAAGAACGTTTCCAAAGCCGCCAAG---------------------CCCGCCGCC H2B.t3|ClusterXI|1|345 ATGCCCAAGAACGTTTCCAAAGCCGCCAAG---------------------CCCGCCGCC H2B.t1|ClusterIX|1|318 ATGGCCAGAACCGCTCCCCGCAAGTACAACAAAGCA------------------------ H2B.t1|ClusterX|1|318 ATGGCCAGAACCGCTCCCCGCAAGTACAACAAGGCA------------------------ *** * * ** H2B.4|ClusterVI|1|354 GTAAACCGCAGAACCAGTCG-------CGA-AGAGAGTCTTTCAAGATTTACATCTATCG H2B.3|ClusterIII|1|363 GAAGGCATCGAGGAAAGGCAAGGAGAGGAAGAACCAAAGCTTCAAGACTCACATCTACAA H2B.1|ClusterII|1|363 GGAGAAAAGAAGAAGCGCCGGGCAAAGCGA-AAGGAATCTTACTCGATCTACATCTACAA H2B.2|ClusterVIII|1|363 GGAGATAAAAAGAAACGGCGGGCAAAGAGA-AAGGAATCTTACTCGATTTACATCTACAA H2B.2|ClusterXX|1|363 GGAGATAAAAAGAAACGGCGGGCAAAGAGA-AAGGAATCTTACTCGATTTACATCTACAA H2B.1|ClusterVII|1|363 GGTGAGAAGAAGAAGCGACGTGCCAAGCGA-AAGGAATCTTACTCCATCTACATCTACAA H2B.2|ClusterXII|1|363 GGAGACAAGAAGAAGCGACGAGCTAAGCGA-AAGGAGTCTTACTCGATCTACATCTACAA H2B.t2|ClusterI|1|345 GGTGCCCGAAAGTACCGAAAAGCC---CGA-AAGGAGTCTTTCGGCATCTACATCTACAA H2B.t3|ClusterXI|1|345 GGTGCCCGCAAGTACCGAAAATCC---CGA-AAGGAGTCTTTCGGCATCTACATCTACAA H2B.t1|ClusterIX|1|318 ---------------------------CGA-AAGCAGTCTTTCGGCATCTACATCTACAA H2B.t1|ClusterX|1|318 ---------------------------CGA-AAGCAGTCTTTCGGCATCTACATCTACAA * * * * * * ******* H2B.4|ClusterVI|1|354 GCTCTTGAAATCGTGCCACCGCGACATGGAAATTTCACAAAAAGCAATGTCATGTGTCAA H2B.3|ClusterIII|1|363 GGTGCTGAAGCAAGTTCATCCGGACACGGGCATGTCATCGAATGCGATGTCGATCATGAA H2B.1|ClusterII|1|363 GGTTCTCAAGCAGGTCCACCCCGATACTGGCATCTCCTCGAAAGCCATGTCAATCATGAA H2B.2|ClusterVIII|1|363 GGTTCTCAAGCAGGTCCACCCTGATACTGGCATCTCCTCAAAAGCCATGTCGATCATGAA H2B.2|ClusterXX|1|363 GGTTCTCAAGCAGGTCCACCCTGATACTGGCATCTCCTCAAAAGCCATGTCTATCATGAA H2B.1|ClusterVII|1|363 GGTCCTGAAGCAGGTTCACCCCGACACCGGTATTTCCTCCAAGGCCATGTCCATCATGAA H2B.2|ClusterXII|1|363 AGTCCTCAAGCAGGTCCACCCCGATACCGGTATCTCCTCAAAGGCCATGTCTATCATGAA H2B.t2|ClusterI|1|345 GGTCCTGAAGCAGGTCCACCCCGACCAGGGAATCTCCACCAAGGCCATGTCTATCATGAA H2B.t3|ClusterXI|1|345 GGTCCTGAAGCAGGTCCACCCCGACCAGGGAATCTCCACCAAGGCCATGTCTATCATGAA H2B.t1|ClusterIX|1|318 GGTCCTCAAGCAAGTCCACCCCGACCAGGGAATCTCCTCCAAGGCCATGTCCATCATGAA H2B.t1|ClusterX|1|318 GGTCCTCAAGCAAGTCCACCCCGACCAGGGAATCTCCTCCAAAGCTATGTCCATCATGAA * * ** ** * ** * ** ** ** ** ***** * ** H2B.4|ClusterVI|1|354 CAGCTTCGTGATGGACATGTTCGAACGTCTTGCTGGCGAAGCTTCGAAACTTGCTTCTCT H2B.3|ClusterIII|1|363 CTCGTTTGTGAACGACATCTTCGACCGGATCGCGAACGAAGCTTCACGCCTGGCTGCGAT H2B.1|ClusterII|1|363 CTCGTTCGTGTCTGACATTTTCGAGCGAATCGCCAACGAAGCTTCTCGACTCGCCAAATA H2B.2|ClusterVIII|1|363 CTCGTTCGTGTCTGACATTTTTGAGCGAATCGCCAATGAAGCTTCTCGACTTGCCAAGTA H2B.2|ClusterXX|1|363 CTCGTTCGTGTCTGACATTTTTGAGCGAATCGCCAATGAAGCTTCTCGACTTGCCAAGTA H2B.1|ClusterVII|1|363 CTCGTTCGTGTCCGACATCTTCGAGCGAATCGCCAACGAAGCCTCCCGACTCGCCAAGTA H2B.2|ClusterXII|1|363 CTCCTTCGTGTCGGACATCTTCGAGCGAATCGCCAACGAAGCATCCCGCCTCGCCAAGTA H2B.t2|ClusterI|1|345 CTCCTTTGTCAACGACATCTTTGACCGAGTTGGTTGCGAGGCCTCCCGATTGGCCAAGAT H2B.t3|ClusterXI|1|345 CTCCTTCGTCAACGACATCTTTGACCGAGTTGGTTGTGAGGCCTCCCGATTGGCCAAGAT H2B.t1|ClusterIX|1|318 CTCGTTCGTGTGCGACATCTTCGACCGAGTCGGCTGCGAAGCTTCCCGCCTTGCCAAGAT H2B.t1|ClusterX|1|318 CTCGTTCGTGTGCGACATCTTCGACCGAGTCGGCTGCGAAGCTTCCCGCCTTGCCAAAAT * ** ** ***** ** ** ** * * ** ** ** * ** H2B.4|ClusterVI|1|354 CAGCAAGCGTAGCACAATCTCTACGAACGACATCCAATTCAGCGTCGACCTCGTCATCGG H2B.3|ClusterIII|1|363 CAACAAGAAGTCGACGATCTCCTCCCGCGAGATCCAGACCGCAGTGCGCCTGCTCCTTCC H2B.1|ClusterII|1|363 CAACAAGAAGTCTACCATCTCTTCCCGAGAAGTCCAGACCGCCGTCCGACTCCTTCTCCC H2B.2|ClusterVIII|1|363 CAACAAGAAGTCGACTATCTCTTCCCGAGAAGTCCAGACCGCCGTCCGACTCCTCCTACC H2B.2|ClusterXX|1|363 CAACAAGAAGTCGACTATCTCTTCCCGAGAAGTTCAGACCGCCGTCCGACTCCTCCTACC H2B.1|ClusterVII|1|363 CAACAAGAAGTCGACCATTTCTTCCCGAGAAGTCCAGACCGCCGTACGACTCCTCCTCCC H2B.2|ClusterXII|1|363 CAACAAGAAGTCGACTATCTCTTCCCGAGAAGTGCAGACCGCTGTCCGACTCCTCCTCCC H2B.t2|ClusterI|1|345 CAACAAGAAGTCCACCATCTCTTCCCGAGAGATCCAGACTGCTTGCCGACTCCTCTTCCC H2B.t3|ClusterXI|1|345 CAACAAGAAGTCCACCATCTCTTCCCGAGAGATCCAGACTGCTTGCCGACTTCTCTTCCC H2B.t1|ClusterIX|1|318 CAACAAGAAGGCCACAATCTCCTCCCGAGAGATTCAGACTGCCTGCCGACTCCTCTTCCC H2B.t1|ClusterX|1|318 CAACAAGAAGGCCACTATCTCCTCCCGAGAGATTCAGACTGCCTGCCGACTCCTCTTCCC ** **** ** ** ** * ** * ** ** * * H2B.4|ClusterVI|1|354 AAAAGAGCTCGCCAAACATGC-------GAAGGGCGGAGCTTTGCGACATTTGCATAAAT H2B.3|ClusterIII|1|363 CGGTGAACTGGCAAAGCACGCAGTTTCTGAAGGCACCAAGGCCGTCAC-------CAAAT H2B.1|ClusterII|1|363 CGGAGAACTTGCTAAGCACGCCGTTTCTGAGGGAACCAAGGCTGTCAC-------CAAGT H2B.2|ClusterVIII|1|363 CGGAGAACTTGCCAAGCACGCCGTTTCTGAGGGAACAAAGGCTGTCAC-------CAAGT H2B.2|ClusterXX|1|363 CGGAGAACTTGCCAAGCACGCCGTTTCTGAGGGAACAAAGGCTGTCAC-------CAAGT H2B.1|ClusterVII|1|363 CGGAGAACTCGCCAAGCACGCCGTCTCTGAAGGAACCAAGGCCGTCAC-------CAAGT H2B.2|ClusterXII|1|363 CGGAGAACTCGCCAAGCACGCCGTCTCTGAAGGAACCAAGGCTGTCAC-------TAAAT H2B.t2|ClusterI|1|345 TGGTGAGCTTTCCAAGCACGCCGTCTCTGAGGGAACCAAGGCTGTCTC-------CAAGT H2B.t3|ClusterXI|1|345 TGGTGAGCTTTCCAAGCACGCCGTTTCTGAGGGAACCAAGGCTGTCTC-------CAAGT H2B.t1|ClusterIX|1|318 TGGTGAGCTCTCCAAGCACGCTATCTCCGAGGGTACTAAGGCTGTCAC-------CAAGT H2B.t1|ClusterX|1|318 TGGTGAGCTCTCCAAACACGCCATCTCCGAGGGCACCAAGGCCGTCAC-------CAAGT ** ** * ** ** ** ** ** * * * ** * H2B.4|ClusterVI|1|354 ATGCTGCGAACAGGCACTTGTAG------------------------------------- H2B.3|ClusterIII|1|363 ACACGTCGTCCCGC---GTCTAA------------------------------------- H2B.1|ClusterII|1|363 ACACCTCCTCTAAG------TAA------------------------------------- H2B.2|ClusterVIII|1|363 ACACTTCTTCAAAG------TAA------------------------------------- H2B.2|ClusterXX|1|363 ACACTTCCTCCAAG---------------------------------------------- H2B.1|ClusterVII|1|363 ACACCTCCTCTAAG------TAAATTTCCTTTTTGGATACTTACGCAAACAGGCCCTTTT H2B.2|ClusterXII|1|363 ACACCTCCTCCAAG------TAA------------------------------------- H2B.t2|ClusterI|1|345 ACACCGCCTCCAAG------TAA------------------------------------- H2B.t3|ClusterXI|1|345 ACACCGCCTCCAAG------TAA------------------------------------- H2B.t1|ClusterIX|1|318 ACACTGCCTCCAAG------TAA------------------------------------- H2B.t1|ClusterX|1|318 ACACTGCCTCCAAG------TAA------------------------------------- * * * H2B.4|ClusterVI|1|354 ------------------------------------------------------------ H2B.3|ClusterIII|1|363 ------------------------------------------------------------ H2B.1|ClusterII|1|363 ------------------------------------------------------------ H2B.2|ClusterVIII|1|363 ------------------------------------------------------------ H2B.2|ClusterXX|1|363 ------------------------------------------------------------ H2B.1|ClusterVII|1|363 TAGGGCCACAAAATTCGGAACGCCTTGGGATGGAAAATTCAACTGACTCGATTGAAATCG H2B.2|ClusterXII|1|363 ------------------------------------------------------------ H2B.t2|ClusterI|1|345 ------------------------------------------------------------ H2B.t3|ClusterXI|1|345 ------------------------------------------------------------ H2B.t1|ClusterIX|1|318 ------------------------------------------------------------ H2B.t1|ClusterX|1|318 ------------------------------------------------------------ H2B.4|ClusterVI|1|354 ------------------------------------------------------------ H2B.3|ClusterIII|1|363 ------------------------------------------------------------ H2B.1|ClusterII|1|363 ------------------------------------------------------------ H2B.2|ClusterVIII|1|363 ------------------------------------------------------------ H2B.2|ClusterXX|1|363 ------------------------------------------------------------ H2B.1|ClusterVII|1|363 CAGATCAGATTGATTTTGCCAAAGCAAAGTCTGCACTCTTGATTGTAAACTGTTCGATCG H2B.2|ClusterXII|1|363 ------------------------------------------------------------ H2B.t2|ClusterI|1|345 ------------------------------------------------------------ H2B.t3|ClusterXI|1|345 ------------------------------------------------------------ H2B.t1|ClusterIX|1|318 ------------------------------------------------------------ H2B.t1|ClusterX|1|318 ------------------------------------------------------------ H2B.4|ClusterVI|1|354 ------------------------------------------ H2B.3|ClusterIII|1|363 ------------------------------------------ H2B.1|ClusterII|1|363 ------------------------------------------ H2B.2|ClusterVIII|1|363 ------------------------------------------ H2B.2|ClusterXX|1|363 ------------------------------------------ H2B.1|ClusterVII|1|363 AAACTATTCCAAAGATATTGATAATAAAAAAATAACTACCTT H2B.2|ClusterXII|1|363 ------------------------------------------ H2B.t2|ClusterI|1|345 ------------------------------------------ H2B.t3|ClusterXI|1|345 ------------------------------------------ H2B.t1|ClusterIX|1|318 ------------------------------------------ H2B.t1|ClusterX|1|318 ------------------------------------------