Multiple Alignment with all H4 nucleic sequences
This aligment has been done with muscle3.8.1 (linux 64 Bits)MUSCLE (3.8) multiple sequence alignment H4.t|ClusterI|1|312 ------------ATGTCTGGTCGAGGAAAAGGAGGCAAGGGTCTTGGAAAGGGCGGCGCC H4.1|ClusterVII|1|312 ------------ATGTCCGGACGAGGCAAAGGAGGAAAGGGACTCGGAAAGGGAGGCGCC H4.1|ClusterXII|1|312 ------------ATGTCCGGACGAGGAAAAGGAGGCAAGGGACTCGGAAAGGGAGGCGCC H4.1|ClusterVIII|13|324 AAACGACTAAAAATGTCAGGACGGGGCAAAGGAGGAAAGGGACTCGGAAAAGGAGGCGCC H4.1|ClusterII|1|312 ------------ATGTCAGGACGAGGCAAAGGAGGAAAGGGACTTGGAAAAGGAGGCGCC H4.1|ClusterIII|1|312 ------------ATGTCAGGACGAGGCAAAGGAGGAAAAGGACTCGGAAAGGGAGGCGCC ***** ** ** ** ******** ** ** ** ***** ** ****** H4.t|ClusterI|1|312 AAGCGTCACCGCAAGATCATGCGAGACAACATCCAGGGCATCACCAAGCCCGCGATCCGA H4.1|ClusterVII|1|312 AAGCGTCACCGAAAGGTCCTTCGTGATAACATCCAGGGAATCACCAAGCCTGCCATTCGA H4.1|ClusterXII|1|312 AAGCGTCATCGAAAGGTCCTTCGTGATAACATCCAGGGAATCACCAAGCCCGCCATTCGA H4.1|ClusterVIII|13|324 AAACGTCACAGAAAGGTGCTTCGTGATAACATCCAGGGAATCACAAAGCCTGCAATTCGA H4.1|ClusterII|1|312 AAGCGTCATCGAAAGGTCCTTCGTGATAACATCCAGGGAATTACCAAGCCCGCAATTCGA H4.1|ClusterIII|1|312 AAGCGTCACCGAAAGGTCCTTCGTGATAACATCCAGGGAATCACCAAGCCCGCTATTCGA ** ***** * *** * * ** ** *********** ** ** ***** ** ** *** H4.t|ClusterI|1|312 CGACTTGCTCGACGAGGTGGCGTCAAGCGAATCTCTGGCCTCATCTACGAAGAGACCCGA H4.1|ClusterVII|1|312 CGACTTGCTCGACGAGGTGGTGTCAAGCGAATCTCTGGCCTCATCTACGAAGAGACTCGA H4.1|ClusterXII|1|312 CGACTTGCTCGACGAGGCGGTGTCAAGCGAATCTCTGGCTTGATCTACGAAGAGACCCGA H4.1|ClusterVIII|13|324 CGACTTGCTCGAAGAGGTGGTGTCAAGCGAATCTCTGGCTTGATCTACGAAGAAACTCGA H4.1|ClusterII|1|312 CGACTTGCTCGACGAGGCGGTGTCAAGCGAATCTCCGGCTTGATCTACGAAGAAACCCGA H4.1|ClusterIII|1|312 CGACTTGCTCGACGAGGCGGTGTCAAGCGAATCTCTGGTTTGATCTACGAAGAGACCCGA ************ **** ** ************** ** * *********** ** *** H4.t|ClusterI|1|312 GGTGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCTGTCACCTACACCGAGCAC H4.1|ClusterVII|1|312 GGTGTTCTCAAGGTCTTCCTTGAGAACGTCATCCGTGATGCTGTCACCTACACCGAACAC H4.1|ClusterXII|1|312 GGTGTCCTCAAAGTCTTCCTTGAGAACGTCATTCGAGATGCGGTCACCTACACCGAGCAC H4.1|ClusterVIII|13|324 GGTGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCTGTCACATACACCGAACAC H4.1|ClusterII|1|312 GGTGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGCGATGCCGTCACTTACACTGAGCAC H4.1|ClusterIII|1|312 GGTGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACAGAACAC ***** ***** ******** *********** ** ** * ***** ***** ** *** H4.t|ClusterI|1|312 GCCAAGCGAAAGACCGTCACTGCTCTCGACGTCGTCTACGCTCTCAAGCGACAGGGCCGA H4.1|ClusterVII|1|312 GCCAAGCGAAAGACTGTCACCGCTCTCGATGTCGTCTACGCTCTCAAGCGACAAGGCCGA H4.1|ClusterXII|1|312 GCCAAGCGAAAGACTGTTACCGCTCTTGACGTAGTCTACGCTCTCAAGCGGCAGGGCCGA H4.1|ClusterVIII|13|324 GCCAAGCGAAAGACTGTCACTGCTCTCGATGTCGTCTATGCTCTCAAACGACAGGGCCGA H4.1|ClusterII|1|312 GCAAAACGAAAGACTGTTACTGCTCTCGATGTCGTCTACGCACTCAAGCGACAGGGCCGA H4.1|ClusterIII|1|312 GCCAAACGAAAGACCGTCACAGCTCTCGACGTCGTCTACGCTCTCAAACGACAGGGCCGA ** ** ******** ** ** ***** ** ** ***** ** ***** ** ** ****** H4.t|ClusterI|1|312 ACCCTTTACGGATTCGGTGGATAA------------------------------------ H4.1|ClusterVII|1|312 ACTCTTTACGGATTCGGTGGATAAGTGGTACG--------------AAGCTTACTCTCAA H4.1|ClusterXII|1|312 ACTCTTTACGGATTCGGTGGATAA------------------------------------ H4.1|ClusterVIII|13|324 ACTCTTTACGGATTCGGTGGATAAGTCCTTCG------------AAAGAAAAAAAATAAA H4.1|ClusterII|1|312 ACTCTTTACGGATTCGGTGGATAA------------------------------------ H4.1|ClusterIII|1|312 ACTCTTTACGGATTCGGTGGATAAGAATCTTGTCCCAGTTAATTACTGCCTAAATCATCA ** ********************* H4.t|ClusterI|1|312 ------------------------------------------------------------ H4.1|ClusterVII|1|312 AACAGGCCCTTTTTAGGGCCAC-AAATTTCAACCTTCCTTTCTTAGGAAATTAATACTTT H4.1|ClusterXII|1|312 ------------------------------------------------------------ H4.1|ClusterVIII|13|324 ACCTGGCCCTTTTCAGGGCCACAAAAT---GAAATAATATTACTATTAAATGATTCTTCT H4.1|ClusterII|1|312 ------------------------------------------------------------ H4.1|ClusterIII|1|312 AACCGGCCCTTTTTAGGGCCACAAAATTTTAAGATTACTTTTCTTTTAACTCTGCCACAA H4.t|ClusterI|1|312 ------------------------------------------------------------ H4.1|ClusterVII|1|312 CAGTCACAGAACTCTTTTCAAAGTTGTTAATTTATAAACGGAATAAAATACTCTTTTTTC H4.1|ClusterXII|1|312 ------------------------------------------------------------ H4.1|ClusterVIII|13|324 GCATGGANATATTTTGCTATATTGGTATAACTTTT------------------------- H4.1|ClusterII|1|312 ------------------------------------------------------------ H4.1|ClusterIII|1|312 AAATTAATAAATTTTGTT-------TTTAATTACTAAAAAAAAAAAAAAAAAAAAAAAAA H4.t|ClusterI|1|312 ------------------------------------------------------------ H4.1|ClusterVII|1|312 CAAATTAAATTCACCATTGACCGAAAAATTCGAGATGAACATTAATAATTCAAGATTCTA H4.1|ClusterXII|1|312 ------------------------------------------------------------ H4.1|ClusterVIII|13|324 ------------------------------------------------------------ H4.1|ClusterII|1|312 ------------------------------------------------------------ H4.1|ClusterIII|1|312 AAAAAAAAAA-------------------------------------------------- H4.t|ClusterI|1|312 --------------------------------------------------------- H4.1|ClusterVII|1|312 TATAGAACTATTATTAACAATTAACCCTGAACAATTCGTAACAAAATTACCTATCCC H4.1|ClusterXII|1|312 --------------------------------------------------------- H4.1|ClusterVIII|13|324 --------------------------------------------------------- H4.1|ClusterII|1|312 --------------------------------------------------------- H4.1|ClusterIII|1|312 ---------------------------------------------------------